Chocolate Protein Muffins Recipe
There’s something incredibly satisfying about biting into warm, moist Chocolate Protein Muffins that taste indulgent yet give you a boost of wholesome energy. These muffins are a chocolate lover’s dream, packed with rich cocoa powder, gooey chocolate chips, and a generous helping of Levels Double Chocolate whey protein. Every bite feels like a mini celebration of flavors and textures, making these muffins perfect for breakfast, a mid-afternoon snack, or even a post-workout treat. If you want a delicious, protein-packed way to satisfy your sweet tooth, these Chocolate Protein Muffins are about to become your new favorite go-to!

Ingredients You’ll Need
These ingredients are simple, accessible, and each plays a crucial role in achieving the perfect balance of moistness, flavor, and that tender crumb we all crave in a muffin.
- Bob’s Red Mill 1:1 gluten free flour: The base that keeps these muffins fluffy and gluten free without sacrificing texture.
- Levels Double Chocolate whey protein powder: Adds a rich chocolate flavor and boosts the protein content for lasting energy.
- Cocoa powder: Infuses the muffins with deep, intense chocolate goodness that complements the protein powder perfectly.
- Sugar: Balances the bitterness from cocoa with just the right touch of sweetness.
- Baking powder: Helps the muffins rise beautifully, giving them a light and airy feel.
- Baking soda: Works with the acid ingredients to activate lift and create tender crumb.
- Salt: Enhances the overall flavors, making the chocolate pop even more.
- Butter (melted and cooled): Adds richness and a moist crumb that makes each muffin irresistible.
- Eggs (room temperature): Bind all ingredients together and add structure for soft, yet sturdy muffins.
- Singing Dog vanilla extract: Adds a subtle sweetness and depth that elevates the chocolate flavor.
- Oat milk (room temperature): Keeps the muffins dairy-friendly and adds moisture for tenderness.
- Chocolate chips: Sprinkle throughout for melty pockets of chocolate that surprise every bite.
How to Make Chocolate Protein Muffins
Step 1: Prep Your Equipment and Oven
Start by preheating your oven to 350 degrees Fahrenheit. Line a 12-count muffin tin with cupcake liners—this will help your muffins release easily and keep them looking picture-perfect.
Step 2: Mix the Dry Ingredients
In a large bowl, whisk together the gluten free flour, baking powder, baking soda, salt, whey protein powder, cocoa powder, and sugar until well combined. This ensures the rising agents and chocolate flavors are evenly distributed throughout the batter for consistent, fluffy muffins every time.
Step 3: Combine the Wet Ingredients
In a separate bowl, whisk together the eggs, oat milk, melted butter, and vanilla extract. Using room temperature ingredients here is key—you’ll get a smoother batter and better muffin texture.
Step 4: Bring It All Together
Pour the wet ingredients into the dry mixture and whisk gently until just combined. Avoid overmixing to keep your muffins tender and airy. Then fold in the chocolate chips, making sure they’re evenly spread throughout the batter.
Step 5: Portion and Bake
Scoop about 3 tablespoons of batter into each lined muffin cup. Don’t forget to top each muffin with a few extra chocolate chips for that irresistible melty finish on top. Bake for 23 to 27 minutes, or until a toothpick inserted in the center comes out clean. The smell in your kitchen at this point will be utterly divine!
Step 6: Cool and Enjoy
Let the muffins cool in the pan for 10 minutes before transferring them to a wire rack to cool completely. This step prevents sogginess and helps your muffins set perfectly with a tender crumb.
How to Serve Chocolate Protein Muffins

Garnishes
For an extra touch, sprinkle a pinch of powdered sugar or a drizzle of melted dark chocolate on top. Fresh berries or a dollop of Greek yogurt can add a fresh contrast and a bit of tangy creaminess that brightens each bite.
Side Dishes
Chocolate Protein Muffins pair beautifully with a hot cup of coffee or a creamy latte. For a wholesome breakfast, serve alongside a colorful fruit salad or a serving of scrambled eggs to balance protein and carbs nicely.
Creative Ways to Present
Try slicing a muffin in half and adding nut butter or avocado for a fun twist. You can also hollow out the center and fill with peanut butter or yogurt for a delightful surprise inside. Serving them in pretty muffin liners or stacked on a rustic wooden board adds charm and hospitality.
Make Ahead and Storage
Storing Leftovers
Keep any leftover Chocolate Protein Muffins in an airtight container at room temperature for up to 5 days. This keeps them soft and moist without drying out, perfect for quick grab-and-go snacks throughout your busy week.
Freezing
If you want to save them for longer, wrap individual muffins tightly in plastic wrap and store in a freezer-safe container or heavy-duty bag. They’ll keep well for up to 2 months—perfect for meal prepping or when you need a chocolate fix on demand.
Reheating
To enjoy a muffin that tastes fresh-baked, simply allow it to thaw at room temperature, then warm in the oven at 300 degrees Fahrenheit for about 5 to 7 minutes. You can also pop it in the microwave for 20 to 30 seconds for a quick warm treat that revives the melty chocolate chip goodness.
FAQs
Can I substitute regular flour for the gluten free flour?
Yes, you can swap in all-purpose flour if you don’t need the recipe to be gluten free. The texture may be slightly different but still delicious and chewy.
Is it important to use Levels Double Chocolate whey protein?
While this protein powder adds an amazing triple-chocolate flavor, you can substitute another chocolate whey protein powder if you like, just make sure it’s a good quality brand to maintain flavor and texture.
Can I make these muffins dairy free?
Absolutely! Using oat milk keeps things dairy free, and you can swap butter for coconut oil or a dairy-free margarine for those who are sensitive.
How do I prevent my muffins from being dense?
Mix the batter gently and only until just combined to avoid overworking the gluten-free flour and protein powder, which can make muffins dense. Also, letting the batter rest for 10 minutes before baking really helps build that lovely muffin crown and tenderness.
Can I add nuts or other mix-ins?
Definitely! Chopped walnuts, pecans, or even a handful of dried cherries would add a fun texture and flavor contrast to these chocolatey treats.
Final Thoughts
If you’re on the hunt for a brilliant balance between indulgence and nutrition, these Chocolate Protein Muffins deliver the best of both worlds. They’re easy to make, satisfy those chocolate cravings, and give you a protein boost to power through your day. Trust me, once you try these, you’ll want to keep a batch in your freezer for all your anytime-snacking moments. Go ahead, bake a batch and let the chocolatey happiness unfold!
